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Anatomical Structure Naming Conventions

This section contains naming conventions for anatomical structures in SNOMED CT.

Topics in this section

Naming Convention for SEP Model
Naming Convention for Digits of Hand and Foot
Naming Convention for Cells Expressing Antigens
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Naming Convention for Cells Expressing Antigens

Fully specified name

Order antigens numerically first.

  • For example,

    • 732279009 |Cell positive for CD3 antigen and positive for CD4 antigen (cell)|

    • NOT

    • Cell positive for CD4 antigen and positive for CD3 antigen

Named antigens follow in alphabetical order.

  • For example,

    • 1373093007 |Cell positive for CD10 antigen and positive for FMC7 antigen (cell)|

    • NOT

    • Cell positive for FMC7 antigen and positive for CD10 antigen

Include “positive”/”negative” for each antigen individually. Do not group by positive or negative expressions.

  • For example,

    • 1373277009 |Cell positive for CD4 antigen and negative for CD25 antigen and positive for CD127 antigen (cell)|

    • NOT

    • Cell positive for CD4 and CD127 antigen and negative for CD127 antigen,

The PT includes the “shorthand" expression. This terming is commonly used in the domain.

  • For example,

    • 1373277009 |Cell positive for CD4 antigen and negative for CD25 antigen and positive for CD127 antigen (cell)| has a PT of “CD4+CD25-CD127+ cell”

    • 1373093007 |Cell positive for CD10 antigen and positive for FMC7 antigen (cell)| has a PT of “CD10+FMC7+ cell”

Include an acceptable description of the FSN minus the semantic tag.

If appropriate, include an acceptable description with the expansion of a gene name, and include the word antigen.

  • For example,

Note: Not all existing content conforms to this guidance.

Naming Convention for SEP Model

For example,

  • Liver structure (body structure)

  • Entire liver (body structure)

  • Liver part (body structure)

For example,

Preferred Term

Additional descriptions

See also Modeling Cells Expressing Antigens

FSN
PT
SYN

Entire liver (body structure)

Entire liver

Entire thumb (body structure)

Entire thumb

Entire first digit of hand

For example,

FSN
PT
SYN
SYN

Liver structure (body structure)

Liver structure

Liver

S concepts are usually named x structure (body structure) or structure of x (body structure). E concepts are usually named entire x (body structure) or x entire (body structure). P concepts are usually named x part (body structure) or part of x (body structure).

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1. FSN must include the word 'structure', 'entire' or 'part' for concepts that are following the SEP model.

2. All descriptions for Entire concept must contain the word 'Entire'.

3. The word 'structure' can be omitted for synonyms.

Thumb structure (body structure)

Thumb structure

First digit of hand

Thumb

Naming Convention for Digits of Hand and Foot

Fully specified names and preferred names should use proper names of digits of hand and foot. The names by order of digits can be added as optional synonyms. The order of fingers is different from the order of digits of hand because the thumb is not a finger in SNOMED CT. Therefore, the order of the finger should not be used to avoid potential confusion.

Naming convention for the structure of digits of hand

FSN
PT
SYN
SYN

Index finger structure (body structure)

FSN
PT
SYN
SYN

Index finger structure

Second digit of hand

Index finger

Little finger structure (body structure)

Little finger structure

Fifth digit of hand

Little finger

Middle finger structure (body structure)

Middle finger structure

Third digit of hand

Middle finger

Ring finger structure (body structure)

Ring finger structure

Fourth digit of hand

Ring finger

Thumb structure (body structure)

Thumb structure

First digit of hand

Thumb

Great toe structure (body structure)

Great toe structure

First digit of foot

First toe

Naming convention for the structure of digits of foot

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Second toe structure (body structure)

Second toe structure

Second digit of foot

Second toe

Third toe structure (body structure)

Third toe structure

Third digit of foot

Third toe

Fourth toe structure (body structure)

Fourth toe structure

Fourth digit of foot

Fourth toe

Little toe structure (body structure)

Little toe structure

Fifth digit of foot

Fifth toe